Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4

Saraswoti Neupane; Lynne A. Goodwin; Nils Högberg; Nikos C. Kyrpides; Sadhna Alström; David Bruce; Beverly Quintana; Christine Munk; Hajdalka Daligault; Hazuki Teshima; Karen Davenport; Krista Reitenga; Lance Green; Patrick Chain; Tracy Erkkila; Wei Gu; Xiaojing Zhang; Yulia Kunde; Olga Chertkov; James Han; Cliff Han; John C. Detter; Natalia Ivanova; Amrita Pati; Amy Chen; Ernest Szeto; Kostas Mavromatis; Marcel Huntemann; Matt Nolan; Sam Pitluck; Shweta Deshpande; Victor Markowitz; Ioanna Pagani; Hans-Peter Klenk; Tanja Woyke; Roger Finlay

doi:10.4056/sigs.4027757

Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4

Saraswoti Neupane
, Lynne A. Goodwin
, Nils Högberg
, Nikos C. Kyrpides
, Sadhna Alström
, David Bruce
, Beverly Quintana
, Christine Munk
, Hajdalka Daligault
, Hazuki Teshima
, Karen Davenport
, Krista Reitenga
, Lance Green
, Patrick Chain
, Tracy Erkkila
, Wei Gu
, Xiaojing Zhang
, Yulia Kunde
, Olga Chertkov
, James Han

Cliff Han, John C. Detter, Natalia Ivanova, Amrita Pati, Amy Chen, Ernest Szeto, Kostas Mavromatis, Marcel Huntemann, Matt Nolan, Sam Pitluck, Shweta Deshpande, Victor Markowitz, Ioanna Pagani, Hans-Peter Klenk, Tanja Woyke, Roger Finlay

Institutionen för skoglig mykologi och växtpatologi

Publikation: Bidrag till tidskrift › Artikel i vetenskaplig tidskrift › Peer review

Sammanfattning

Serratia proteamaculans S4 (previously Serratia sp. S4), isolated from the rhizosphere of wild Equisetum sp., has the ability to stimulate plant growth and to suppress the growth of several soil-borne fungal pathogens of economically important crops. Here we present the non-contiguous, finished genome sequence of S. proteamaculans S4, which consists of a 5,324,944 bp circular chromosome and a 129,797 bp circular plasmid. The chromosome contains 5,008 predicted genes while the plasmid comprises 134 predicted genes. In total, 4,993 genes are assigned as protein-coding genes. The genome consists of 22 rRNA genes, 82 tRNA genes and 58 pseudogenes. This genome is a part of the project "Genomics of four rapeseed plant growth-promoting bacteria with antagonistic effect on plant pathogens" awarded through the 2010 DOE-JGI's Community Sequencing Program.

Originalspråk	Engelska
Sidor (från-till)	441-449
Antal sidor	9
Tidskrift	Standards in Genomic Sciences
Volym	8
Nummer	3
DOI	https://doi.org/10.4056/sigs.4027757
Status	Publicerad - 2013

Nyckelord

Facultative aerobe
gram-negative
motile
non-sporulating
mesophilic
chemoor-ganotrophic
agriculture

Åtkomst av dokument

10.4056/sigs.4027757

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Neupane, S., Goodwin, L. A., Högberg, N., Kyrpides, N. C., Alström, S., Bruce, D., Quintana, B., Munk, C., Daligault, H., Teshima, H., Davenport, K., Reitenga, K., Green, L., Chain, P., Erkkila, T., Gu, W., Zhang, X., Kunde, Y., Chertkov, O., ... Finlay, R. (2013). Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4. Standards in Genomic Sciences, 8(3), 441-449. https://doi.org/10.4056/sigs.4027757

@article{6565b44441bf438499510060b6f8fbba,

title = "Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4",

abstract = "Serratia proteamaculans S4 (previously Serratia sp. S4), isolated from the rhizosphere of wild Equisetum sp., has the ability to stimulate plant growth and to suppress the growth of several soil-borne fungal pathogens of economically important crops. Here we present the non-contiguous, finished genome sequence of S. proteamaculans S4, which consists of a 5,324,944 bp circular chromosome and a 129,797 bp circular plasmid. The chromosome contains 5,008 predicted genes while the plasmid comprises 134 predicted genes. In total, 4,993 genes are assigned as protein-coding genes. The genome consists of 22 rRNA genes, 82 tRNA genes and 58 pseudogenes. This genome is a part of the project {"}Genomics of four rapeseed plant growth-promoting bacteria with antagonistic effect on plant pathogens{"} awarded through the 2010 DOE-JGI's Community Sequencing Program.",

keywords = "Facultative aerobe, gram-negative, motile, non-sporulating, mesophilic, chemoor-ganotrophic, agriculture, Facultative aerobe, gram-negative, motile, non-sporulating, mesophilic, chemoor-ganotrophic, agriculture",

author = "Saraswoti Neupane and Goodwin, \{Lynne A.\} and Nils H{\"o}gberg and Kyrpides, \{Nikos C.\} and Sadhna Alstr{\"o}m and David Bruce and Beverly Quintana and Christine Munk and Hajdalka Daligault and Hazuki Teshima and Karen Davenport and Krista Reitenga and Lance Green and Patrick Chain and Tracy Erkkila and Wei Gu and Xiaojing Zhang and Yulia Kunde and Olga Chertkov and James Han and Cliff Han and Detter, \{John C.\} and Natalia Ivanova and Amrita Pati and Amy Chen and Ernest Szeto and Kostas Mavromatis and Marcel Huntemann and Matt Nolan and Sam Pitluck and Shweta Deshpande and Victor Markowitz and Ioanna Pagani and Hans-Peter Klenk and Tanja Woyke and Roger Finlay",

year = "2013",

doi = "10.4056/sigs.4027757",

language = "English",

volume = "8",

pages = "441--449",

journal = "Standards in Genomic Sciences",

issn = "1944-3277",

publisher = "Genomic Standards Consortium",

number = "3",

}

Neupane, S, Goodwin, LA, Högberg, N, Kyrpides, NC, Alström, S, Bruce, D, Quintana, B, Munk, C, Daligault, H, Teshima, H, Davenport, K, Reitenga, K, Green, L, Chain, P, Erkkila, T, Gu, W, Zhang, X, Kunde, Y, Chertkov, O, Han, J, Han, C, Detter, JC, Ivanova, N, Pati, A, Chen, A, Szeto, E, Mavromatis, K, Huntemann, M, Nolan, M, Pitluck, S, Deshpande, S, Markowitz, V, Pagani, I, Klenk, H-P, Woyke, T & Finlay, R 2013, 'Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4', Standards in Genomic Sciences, vol. 8, nr. 3, s. 441-449. https://doi.org/10.4056/sigs.4027757

TY - JOUR

T1 - Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4

AU - Neupane, Saraswoti

AU - Goodwin, Lynne A.

AU - Högberg, Nils

AU - Kyrpides, Nikos C.

AU - Alström, Sadhna

AU - Bruce, David

AU - Quintana, Beverly

AU - Munk, Christine

AU - Daligault, Hajdalka

AU - Teshima, Hazuki

AU - Davenport, Karen

AU - Reitenga, Krista

AU - Green, Lance

AU - Chain, Patrick

AU - Erkkila, Tracy

AU - Gu, Wei

AU - Zhang, Xiaojing

AU - Kunde, Yulia

AU - Chertkov, Olga

AU - Han, James

AU - Han, Cliff

AU - Detter, John C.

AU - Ivanova, Natalia

AU - Pati, Amrita

AU - Chen, Amy

AU - Szeto, Ernest

AU - Mavromatis, Kostas

AU - Huntemann, Marcel

AU - Nolan, Matt

AU - Pitluck, Sam

AU - Deshpande, Shweta

AU - Markowitz, Victor

AU - Pagani, Ioanna

AU - Klenk, Hans-Peter

AU - Woyke, Tanja

AU - Finlay, Roger

PY - 2013

Y1 - 2013

N2 - Serratia proteamaculans S4 (previously Serratia sp. S4), isolated from the rhizosphere of wild Equisetum sp., has the ability to stimulate plant growth and to suppress the growth of several soil-borne fungal pathogens of economically important crops. Here we present the non-contiguous, finished genome sequence of S. proteamaculans S4, which consists of a 5,324,944 bp circular chromosome and a 129,797 bp circular plasmid. The chromosome contains 5,008 predicted genes while the plasmid comprises 134 predicted genes. In total, 4,993 genes are assigned as protein-coding genes. The genome consists of 22 rRNA genes, 82 tRNA genes and 58 pseudogenes. This genome is a part of the project "Genomics of four rapeseed plant growth-promoting bacteria with antagonistic effect on plant pathogens" awarded through the 2010 DOE-JGI's Community Sequencing Program.

AB - Serratia proteamaculans S4 (previously Serratia sp. S4), isolated from the rhizosphere of wild Equisetum sp., has the ability to stimulate plant growth and to suppress the growth of several soil-borne fungal pathogens of economically important crops. Here we present the non-contiguous, finished genome sequence of S. proteamaculans S4, which consists of a 5,324,944 bp circular chromosome and a 129,797 bp circular plasmid. The chromosome contains 5,008 predicted genes while the plasmid comprises 134 predicted genes. In total, 4,993 genes are assigned as protein-coding genes. The genome consists of 22 rRNA genes, 82 tRNA genes and 58 pseudogenes. This genome is a part of the project "Genomics of four rapeseed plant growth-promoting bacteria with antagonistic effect on plant pathogens" awarded through the 2010 DOE-JGI's Community Sequencing Program.

KW - Facultative aerobe

KW - gram-negative

KW - motile

KW - non-sporulating

KW - mesophilic

KW - chemoor-ganotrophic

KW - agriculture

KW - Facultative aerobe

KW - gram-negative

KW - motile

KW - non-sporulating

KW - mesophilic

KW - chemoor-ganotrophic

KW - agriculture

UR - https://res.slu.se/id/publ/55825

U2 - 10.4056/sigs.4027757

DO - 10.4056/sigs.4027757

M3 - Journal article

C2 - 24501629

SN - 1944-3277

VL - 8

SP - 441

EP - 449

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

IS - 3

ER -