Creating a good learning and sharing environment for bioinformatics

Tomas Klingström; Jan Ingemar Ohlsson

doi:10.3920/978-90-8686-940-4_13

Creating a good learning and sharing environment for bioinformatics

Tomas Klingström
, Jan Ingemar Ohlsson

Publikation: Kapitel i bok/rapport/konferenshandling › Konferensartikel i proceedings › Peer review

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Sammanfattning

Most bioinformatics researchers create their own working environments depending on their training, access to computing resources and what advice they receive from other researchers. This makes the development of training programs difficult as much knowledge and work is locked into each researcher’s unique computing environment for data analysis.Using software container solutions such as Biocontainers and a ‘one image per task’ coding pattern when developing a workflow, it is easy for an application expert to rewrite workflows for research, training and dissemination of new workflows for analysing data. This paper describes the reasoning behind this approach which is now being tested in a collaboration between livestock researchers in Sweden and South Africa.

Originalspråk	Engelska
Titel på värdpublikation	Proceedings of the 12th World Congress on Genetics Applied to Livestock Production (WCGALP) : echnical and species orientated innovations in animal breeding,and contribution of genetics to solving societal challenges
Förlag	Wageningen Academic Publishers
Sidor	98-101
Antal sidor	4
ISBN (elektroniskt)	978-90-8686-940-4
DOI	https://doi.org/10.3920/978-90-8686-940-4_13
Status	Publicerad - 2022

FN:s SDG:er

Detta resultat bidrar till följande hållbara utvecklingsmål:

SDG 4 – God utbildning
SDG 9 – Hållbar industri, innovationer och infrastruktur

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10.3920/978-90-8686-940-4_13

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Klingström, T., & Ohlsson, J. I. (2022). Creating a good learning and sharing environment for bioinformatics. I Proceedings of the 12th World Congress on Genetics Applied to Livestock Production (WCGALP) : echnical and species orientated innovations in animal breeding,and contribution of genetics to solving societal challenges (s. 98-101). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-940-4_13

Klingström, Tomas ; Ohlsson, Jan Ingemar. / Creating a good learning and sharing environment for bioinformatics. Proceedings of the 12th World Congress on Genetics Applied to Livestock Production (WCGALP) : echnical and species orientated innovations in animal breeding,and contribution of genetics to solving societal challenges. Wageningen Academic Publishers, 2022. s. 98-101

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title = "Creating a good learning and sharing environment for bioinformatics",

abstract = "Most bioinformatics researchers create their own working environments depending on their training, access to computing resources and what advice they receive from other researchers. This makes the development of training programs difficult as much knowledge and work is locked into each researcher{\textquoteright}s unique computing environment for data analysis.Using software container solutions such as Biocontainers and a {\textquoteleft}one image per task{\textquoteright} coding pattern when developing a workflow, it is easy for an application expert to rewrite workflows for research, training and dissemination of new workflows for analysing data. This paper describes the reasoning behind this approach which is now being tested in a collaboration between livestock researchers in Sweden and South Africa.",

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year = "2022",

doi = "10.3920/978-90-8686-940-4\_13",

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booktitle = "Proceedings of the 12th World Congress on Genetics Applied to Livestock Production (WCGALP) : echnical and species orientated innovations in animal breeding,and contribution of genetics to solving societal challenges",

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Klingström, T & Ohlsson, JI 2022, Creating a good learning and sharing environment for bioinformatics. i Proceedings of the 12th World Congress on Genetics Applied to Livestock Production (WCGALP) : echnical and species orientated innovations in animal breeding,and contribution of genetics to solving societal challenges. Wageningen Academic Publishers, s. 98-101. https://doi.org/10.3920/978-90-8686-940-4_13

Creating a good learning and sharing environment for bioinformatics. / Klingström, Tomas; Ohlsson, Jan Ingemar.
Proceedings of the 12th World Congress on Genetics Applied to Livestock Production (WCGALP) : echnical and species orientated innovations in animal breeding,and contribution of genetics to solving societal challenges. Wageningen Academic Publishers, 2022. s. 98-101.

Publikation: Kapitel i bok/rapport/konferenshandling › Konferensartikel i proceedings › Peer review

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Klingström T, Ohlsson JI. Creating a good learning and sharing environment for bioinformatics. I Proceedings of the 12th World Congress on Genetics Applied to Livestock Production (WCGALP) : echnical and species orientated innovations in animal breeding,and contribution of genetics to solving societal challenges. Wageningen Academic Publishers. 2022. s. 98-101 doi: 10.3920/978-90-8686-940-4_13