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Considerations and consequences of allowing DNA sequence data as types of fungal taxa

  • Juan Carlos Zamora
  • , Teuvo Ahti
  • , Balint Dima
  • , Maria Martha Dios
  • , Pradeep Kumar Divakar
  • , Clovis Douanla-Meli
  • , Brian Douglas
  • , Elisandro Ricardo Drechsler-Santos
  • , Paul S. Dyer
  • , Ursula Eberhardt
  • , Damien Ertz
  • , Fernando Esteve-Raventos
  • , M. Catherine Aime
  • , Javier Angel Etayo Salazar
  • , Vera Evenson
  • , Guillaume Eyssartier
  • , Edit Farkas
  • , Alain Favre
  • , Anna G. Fedosova
  • , Mario Filippa
  • Peter Finy, Adam Flakus, Simon Fos, A. Martyn Ainsworth, Jacques Fournier, Andre Fraiture, Paolo Franchi, Ana Esperanza Franco Molano, Gernot Friebes, Andreas Frisch, Alan Fryday, Giuliana Furci, Ricardo Galan Marquez, Matteo Garbelotto, Laszlo Albert, Joaquina Maria Garcia-Martin, Monica A. Garcia Otalora, Dania Garcia Sanchez, Alain Gardiennet, Sigisfredo Garnica, Isaac Garrido Benavent, Genevieve Gates, Alice da Cruz Lima Gerlach, Masoomeh Ghobad-Nejhad, Tatiana B. Gibertoni, Edgardo Alberto, Tine Grebenc, Irmgard Greilhuber, Bella Grishkan, Johannes Z. Groenewald, Martin Grube, Gerald Gruhn, Cecile Gueidan, Gro Gulden, Luis F. P. Gusmao, Josef Hafellner, Alberto Altes Garcia, Michel Hairaud, Marek Halama, Nils Hallenberg, Roy E. Halling, Karen Hansen, Christoffer Bugge Harder, Jacob Heilmann-Clausen, Stip Helleman, Alain Henriot, Margarita Hernandez-Restrepo, Dmitry Ageev, Raphael Herve, Caroline Hobart, Mascha Hoffmeister, Klaus Hoiland, Jan Holec, Hakon Holien, Karen Hughes, Vit Hubka, Seppo Huhtinen, Boris Ivancevic, Reinhard Agerer, Marian Jagers, Walter Jaklitsch, AnnaElise Jansen, Ruvishika S. Jayawardena, Thomas Stjernegaard Jeppesen, Mikael Jeppson, Peter Johnston, Per Magnus Jorgensen, Ingvar Karnefelt, Liudmila B. Kalinina, Begona Aguirre-Hudson, Gintaras Kantvilas, Mitko Karadelev, Taiga Kasuya, Ivona Kautmanova, Richard W. Kerrigan, Martin Kirchmair, Anna Kiyashko, Daniel G. Knapp, Henning Knudsen, Kerry Knudsen, Joe Ammirati, Tommy Knutsson, Miroslav Kolarik, Urmas Koljalg, Alica Kosuthova, Attila Koszka, Heikki Kotiranta, Vera Kotkova, Ondrej Koukol, Jiri Kout, Gabor M. Kovacs, Mans Svensson, Harry Andersson, Martin Kriz, Asa Kruys, Viktor Kudera, Linas Kudzma, Francisco Kuhar, Martin Kukwa, T. K. Arun Kumar, Vladimir Kunca, Ivana Kusan, Thomas W. Kuyper, Claudio Angelini, Carlos Lado, Thomas Laessoe, Patrice Laine, Ewald Langer, Ellen Larsson, Karl-Henrik Larsson, Gary Laursen, Christian Lechat, Serena Lee, James C. Lendemer, Vladimir Antonin, Laura Levin, Uwe Lindemann, Hakan Lindstrom, Xingzhong Liu, Regulo Carlos Llarena Hernandez, Esteve Llop, Csaba Locsmandi, Deborah Jean Lodge, Michael Loizides, Laszlo Lokos, Takayuki Aoki, Jennifer Luangsa-ard, Matthias Luderitz, Thorsten Lumbsch, Matthias Lutz, Dan Mahoney, Ekaterina Malysheva, Vera Malysheva, Patinjareveettil Manimohan, Yasmina Mann-Felix, Guilhermina Marques, Andre Aptroot, Ruben Martinez-Gil, Guy Marson, Gerardo Mata, P. Brandon Matheny, Geir Harald Mathiassen, Neven Matocec, Helmut Mayrhofer, Mehdi Mehrabi, Ireneia Melo, Armin Mesic, Didier Argaud, Andrew S. Methven, Otto Miettinen, Ana M. Millanes Romero, Andrew N. Miller, James K. Mitchell, Roland Moberg, Pierre-Arthur Moreau, Gabriel Moreno, Olga Morozova, Asuncion Morte, Blanca Imelda Arguello Sosa, Lucia Muggia, Guillermo Munoz Gonzalez, Leena Myllys, Istvan Nagy, Laszlo G. Nagy, Maria Alice Neves, Tuomo Niemela, Pier Luigi Nimis, Nicolas Niveiro, Machiel E. Noordeloos, Arne Aronsen, Anders Nordin, Sara Raouia Noumeur, Yuri Novozhilov, Jorinde Nuytinck, Esteri Ohenoja, Patricia Oliveira Fiuza, Alan Orange, Alexander Ordynets, Beatriz Ortiz-Santana, Leticia Pacheco, Ulf Arup, Ferenc Pal-Fam, Melissa Palacio, Zdenek Palice, Viktor Papp, Kadri Partel, Julia Pawlowska, Aurelia Paz, Ursula Peintner, Shaun Pennycook, Olinto Liparini Pereira, Bita Asgari, Pablo Perez Daniels, Miguel A. Perez-De-Gregorio Capella, Carlos Manuel Perez del Amo, Sergio Perez Gorjon, Sergio Perez-Ortega, Israel Perez-Vargas, Brian A. Perry, Jens H. Petersen, Ronald H. Petersen, Donald H. Pfister, Roland Kirschner, Boris Assyov, Chayanard Phukhamsakda, Marcin Piatek, Meike Piepenbring, Raquel Pino-Bodas, Juan Pablo Pinzon Esquivel, Paul Pirot, Eugene S. Popov, Orlando Popoff, Maria Prieto Alvaro, Christian Printzen, Violeta Atienza, Nadezhda Psurtseva, Witoon Purahong, Luis Quijada, Gerhard Rambold, Natalia A. Ramirez, Huzefa Raja, Olivier Raspe, Tania Raymundo, Martina Reblova, Yury A. Rebriev, Ditte Bandini, Juan de Dios Reyes Garcia, Miguel Angel Ribes Ripoll, Franck Richard, Mike J. Richardson, Victor J. Rico, Gerardo Lucio Robledo, Flavia Rodrigues Barbosa, Cristina Rodriguez-Caycedo, Pamela Rodriguez-Flakus, Anna Ronikier, Joao Luis Baptista-Ferreira, Luis Rubio Casas, Katerina Rusevska, Gunter Saar, Irja Saar, Isabel Salcedo, Sergio M. Salcedo Martinez, Carlos A. Salvador Montoya, Santiago Sanchez-Ramirez, J. Vladimir Sandoval-Sierra, Sergi Santamaria, Hans-Otto Baral, Josiane Santana Monteiro, Hans Josef Schroers, Barbara Schulz, Geert Schmidt-Stohn, Trond Schumacher, Beatrice Senn-Irlet, Hana Sevcikova, Oleg Shchepin, Takashi Shirouzu, Anton Shiryaev, Tim Baroni, Klaus Siepe, Esteban B. Sir, Mohammad Sohrabi, Karl Soop, Viacheslav Spirin, Toby Spribille, Marc Stadler, Joost Stalpers, Soili Stenroos, Ave Suija, Robert Weingart Barreto, Stellan Sunhede, Sten Svantesson, Sigvard Svensson, Tatyana Yu Svetasheva, Krzysztof Swierkosz, Heidi Tamm, Hatira Taskin, Adrien Taudiere, Jan-Olof Tedebrand, Raul Tena Lahoz, Henry Baker, Marina Temina, Arne Thell, Marco Thines, Goren Thor, Holger Thus, Leif Tibell, Sanja Tibell, Einar Timdal, Zdenko Tkalcec, Tor Tonsberg, Ann Bell, Gerard Trichies, Dagmar Triebel, Andrei Tsurykau, Rodham E. Tulloss, Veera Tuovinen, Miguel Ulloa Sosa, Carlos Urcelay, Francois Valade, Ricardo Valenzuela Garza, Pieter van den Boom, Jean-Michel Bellanger, Nicolas Van Vooren, Aida M. Vasco-Palacios, Jukka Vauras, Juan Manuel Velasco Santos, Else Vellinga, Annemieke Verbeken, Per Vetlesen, Alfredo Vizzini, Hermann Voglmayr, Sergey Volobuev, Ibai Olariaga, Francesco Bellu, Wolfgang von Brackel, Elena Voronina, Grit Walther, Roy Watling, Evi Weber, Mats Wedin, Oyvind Weholt, Martin Westberg, Eugene Yurchenko, Petr Zehnalek, Martin Bemmann, Huang Zhang, Mikhail P. Zhurbenko, Stefan Ekmani, Mika Bendiksby, Egil Bendiksen, Katriina Bendiksen, Lajos Benedek, Anna Beresova-Guttova, Franz Berger, Reinhard Berndt, Annarosa Bernicchia, Svengunnar Ryman, Alona Yu Biketova, Enrico Bizio, Curtis Bjork, Teun Boekhout, David Boertmann, Tanja Bohning, Florent Boittin, Carlos G. Boluda, Menno W. Boomsluiter, Jan Borovicka, Luis Alberto Parra, Tor Erik Brandrud, Uwe Braun, Irwin Brodo, Tatiana Bulyonkova, Harold H. Burdsall, Bart Buyck, Ana Rosa Burgaz, Vicent Calatayud, Philippe Callac, Emanuele Campo, Jozsef Geml, Massimo Candusso, Brigitte Capoen, Joaquim Carbo, Matteo Carbone, Rafael F. Castaneda-Ruiz, Michael A. Castellano, Jie Chen, Philippe Clerc, Giovanni Consiglio, Gilles Corriol, Anna Rosling, Regis Courtecuisse, Ana Crespo, Cathy Cripps, Pedro W. Crous, Gladstone Alves da Silva, Meiriele da Silva, Marjo Dam, Nico Dam, Frank Dammrich, Kanad Das, Slavomir Adamcik, Linda Davies, Eske De Crop, Andre De Kesel, Ruben De Lange, Barbara De Madrignac Bonzi, Thomas Edison E. dela Cruz, Lynn Delgat, Vincent Demoulin, Dennis E. Desjardin, Paul Diederich

Publikation: Bidrag till tidskriftArtikel i vetenskaplig tidskriftPeer review

Sammanfattning

Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
OriginalspråkEngelska
Sidor (från-till)167-175
Antal sidor9
TidskriftIMA Fungus
Volym9
Nummer1
DOI
StatusPublicerad - 2018

Nyckelord

  • IMC11
  • nomenclature
  • speciation
  • taxonomy
  • typification
  • voucherless fungi

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