A refined circular template matching method for classification of human cytomegalovirus capsids in TEM images

Ida-Maria Sintorn; Gunilla Borgefors; M. Homman-Loudiyi; C. Söderberg-Nauclér

doi:10.1016/j.cmpb.2004.03.006

A refined circular template matching method for classification of human cytomegalovirus capsids in TEM images

Ida-Maria Sintorn
, Gunilla Borgefors
, M. Homman-Loudiyi
, C. Söderberg-Nauclér

Publikation: Bidrag till tidskrift › Artikel i vetenskaplig tidskrift › Peer review

Sammanfattning

An automatic image analysis method for describing, segmenting, and classifying human cytomegalovirus capsids in transmission electron micrograph (TEM) im-ages of host cell nuclei has been developed. Three stages of the capsid assembly process in the host cell nucleus have been investigated. Each class is described by a radial density profile, which is the average grey-level at each radial distance from the center. A template, constructed from the profile, is used to find possible capsid locations by correlation based matching. The matching results are further refined by size and distortion analysis of each possible capsid, resulting in a final segmentation and classification. (C) 2003 Elsevier Ireland Ltd. All rights reserved.

Originalspråk	Engelska
Sidor (från-till)	95-102
Antal sidor	8
Tidskrift	Computer Methods and Programs in Biomedicine
Volym	76
Nummer	2
DOI	https://doi.org/10.1016/j.cmpb.2004.03.006
Status	Publicerad - 2004

Nyckelord

image analysis
radial density profile
herpesvirus
correlation

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10.1016/j.cmpb.2004.03.006

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title = "A refined circular template matching method for classification of human cytomegalovirus capsids in TEM images",

abstract = "An automatic image analysis method for describing, segmenting, and classifying human cytomegalovirus capsids in transmission electron micrograph (TEM) im-ages of host cell nuclei has been developed. Three stages of the capsid assembly process in the host cell nucleus have been investigated. Each class is described by a radial density profile, which is the average grey-level at each radial distance from the center. A template, constructed from the profile, is used to find possible capsid locations by correlation based matching. The matching results are further refined by size and distortion analysis of each possible capsid, resulting in a final segmentation and classification. (C) 2003 Elsevier Ireland Ltd. All rights reserved.",

keywords = "image analysis, radial density profile, herpesvirus, correlation, image analysis, radial density profile, herpesvirus, correlation",

author = "Ida-Maria Sintorn and Gunilla Borgefors and M. Homman-Loudiyi and C. S{\"o}derberg-Naucl{\'e}r",

year = "2004",

doi = "10.1016/j.cmpb.2004.03.006",

language = "English",

volume = "76",

pages = "95--102",

journal = "Computer Methods and Programs in Biomedicine",

issn = "0169-2607",

publisher = "ELSEVIER SCI IRELAND LTD",

number = "2",

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TY - JOUR

T1 - A refined circular template matching method for classification of human cytomegalovirus capsids in TEM images

AU - Sintorn, Ida-Maria

AU - Borgefors, Gunilla

AU - Homman-Loudiyi, M.

AU - Söderberg-Nauclér, C.

PY - 2004

Y1 - 2004

N2 - An automatic image analysis method for describing, segmenting, and classifying human cytomegalovirus capsids in transmission electron micrograph (TEM) im-ages of host cell nuclei has been developed. Three stages of the capsid assembly process in the host cell nucleus have been investigated. Each class is described by a radial density profile, which is the average grey-level at each radial distance from the center. A template, constructed from the profile, is used to find possible capsid locations by correlation based matching. The matching results are further refined by size and distortion analysis of each possible capsid, resulting in a final segmentation and classification. (C) 2003 Elsevier Ireland Ltd. All rights reserved.

AB - An automatic image analysis method for describing, segmenting, and classifying human cytomegalovirus capsids in transmission electron micrograph (TEM) im-ages of host cell nuclei has been developed. Three stages of the capsid assembly process in the host cell nucleus have been investigated. Each class is described by a radial density profile, which is the average grey-level at each radial distance from the center. A template, constructed from the profile, is used to find possible capsid locations by correlation based matching. The matching results are further refined by size and distortion analysis of each possible capsid, resulting in a final segmentation and classification. (C) 2003 Elsevier Ireland Ltd. All rights reserved.

KW - image analysis

KW - radial density profile

KW - herpesvirus

KW - correlation

KW - image analysis

KW - radial density profile

KW - herpesvirus

KW - correlation

UR - https://res.slu.se/id/publ/5602

U2 - 10.1016/j.cmpb.2004.03.006

DO - 10.1016/j.cmpb.2004.03.006

M3 - Journal article

C2 - 15451159

SN - 0169-2607

VL - 76

SP - 95

EP - 102

JO - Computer Methods and Programs in Biomedicine

JF - Computer Methods and Programs in Biomedicine

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ER -