Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

Wade Abbott; Orly Alber; Ed Bayer; Jean-Guy Berrin; Alisdair Boraston; Harry Brumer; Ryszard Brzezinski; Anthony Clarke; Beatrice Cobucci-Ponzano; Darrell Cockburn; Pedro Coutinho; Mirjam Czjzek; Bareket Dassa; Gideon John Davies; Vincent Eijsink; Jens Eklof; Alfons Felice; Elizabeth Ficko-Blean; Geoff Pincher; Thierry Fontaine; Zui Fujimoto; Kiyotaka Fujita; Shinya Fushinobu; Harry Gilbert; Tracey Gloster; Ethan Goddard-Borger; Ian Greig; Jan-Hendrik Hehemann; Glyn Hemsworth; Bernard Henrissat; Masafumi Hidaka; Ramon Hurtado-Guerrero; Kiyohiko Igarashi; Takuya Ishida; Stefan Janecek; Seino Jongkees; Nathalie Juge; Satoshi Kaneko; Takane Katayama; Motomitsu Kitaoka; Naotake Konno; Daniel Kracher; Anna Kulminskaya; Alicia Lammerts van Bueren; Sine Larsen; Junho Lee; Markus Linder; Leila LoLeggio; Roland Ludwig; Ana Luis; Mirko Maksimainen; Brian Mark; Richard McLean; Gurvan Michel; Gurvan Michel; Cedric Montanier; Marco Moracci; Haruhide Mori; Hiroyuki Nakai; Wim Nerinckx; Takayuki Ohnuma; Richard Pickersgill; Kathleen Piens; Tirso Pons; Etienne Rebuffet; Peter Reilly; Magali Remaud-Simeon; Brian Rempel; Kyle Robinson; David Rose; Juha Rouvinen; Wataru Saburi; Yuichi Sakamoto; Mats Sandgren; Fathima Shaikh; Yuval Shoham; Franz St John; Jerry Stahlberg; Michael Suits; Gerlind Sulzenbacher; Tomomi Sumida; Ryuichiro Suzuki; Birte Svensson; Toki Taira; Ed Taylor; Takashi Tonozuka; Breeanna Urbanowicz; Gustav Vaaje-Kolstad; Wim Van den Ende; Annabelle Varrot; Maxime Versluys; Florence Vincent; David Vocadlo; Warren Wakarchuk; Tom Wennekes; Rohan Williams; Spencer Williams; David Wilson; Stephen Withers; Katsuro Yaoi; Vivian Yip; Ran Zhang

doi:10.1093/glycob/cwx089

Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

Wade Abbott
, Orly Alber
, Ed Bayer
, Jean-Guy Berrin
, Alisdair Boraston
, Harry Brumer
, Ryszard Brzezinski
, Anthony Clarke
, Beatrice Cobucci-Ponzano
, Darrell Cockburn
, Pedro Coutinho
, Mirjam Czjzek
, Bareket Dassa
, Gideon John Davies
, Vincent Eijsink
, Jens Eklof
, Alfons Felice
, Elizabeth Ficko-Blean
, Geoff Pincher
, Thierry Fontaine

Zui Fujimoto, Kiyotaka Fujita, Shinya Fushinobu, Harry Gilbert, Tracey Gloster, Ethan Goddard-Borger, Ian Greig, Jan-Hendrik Hehemann, Glyn Hemsworth, Bernard Henrissat, Masafumi Hidaka, Ramon Hurtado-Guerrero, Kiyohiko Igarashi, Takuya Ishida, Stefan Janecek, Seino Jongkees, Nathalie Juge, Satoshi Kaneko, Takane Katayama, Motomitsu Kitaoka, Naotake Konno, Daniel Kracher, Anna Kulminskaya, Alicia Lammerts van Bueren, Sine Larsen, Junho Lee, Markus Linder, Leila LoLeggio, Roland Ludwig, Ana Luis, Mirko Maksimainen, Brian Mark, Richard McLean, Gurvan Michel, Gurvan Michel, Cedric Montanier, Marco Moracci, Haruhide Mori, Hiroyuki Nakai, Wim Nerinckx, Takayuki Ohnuma, Richard Pickersgill, Kathleen Piens, Tirso Pons, Etienne Rebuffet, Peter Reilly, Magali Remaud-Simeon, Brian Rempel, Kyle Robinson, David Rose, Juha Rouvinen, Wataru Saburi, Yuichi Sakamoto, Mats Sandgren, Fathima Shaikh, Yuval Shoham, Franz St John, Jerry Stahlberg, Michael Suits, Gerlind Sulzenbacher, Tomomi Sumida, Ryuichiro Suzuki, Birte Svensson, Toki Taira, Ed Taylor, Takashi Tonozuka, Breeanna Urbanowicz, Gustav Vaaje-Kolstad, Wim Van den Ende, Annabelle Varrot, Maxime Versluys, Florence Vincent, David Vocadlo, Warren Wakarchuk, Tom Wennekes, Rohan Williams, Spencer Williams, David Wilson, Stephen Withers, Katsuro Yaoi, Vivian Yip, Ran Zhang

Department of Molecular Sciences

Publication: Other publication › Research › peer-review

Abstract

CAZypedia was initiated in 2007 to create a comprehensive, living encyclopedia of the carbohydrate active enzymes (CAZymes) and associated carbohydrate-binding modules involved in the synthesis, modification and degradation of complex carbohydrates. CAZypedia is closely connected with the actively curated CAZy database, which provides a sequence-based foundation for the biochemical, mechanistic and structural characterization of these diverse proteins. Now celebrating its 10th anniversary online, CAZypedia is a successful example of dynamic, community-driven and expert-based biocuration. CAZypedia is an open-access resource available at URL http://www.cazypedia.org.

Original language	English
Publisher	OXFORD UNIV PRESS INC
Number of pages	6
Volume	28
DOIs	https://doi.org/10.1093/glycob/cwx089
Publication status	Published - 2018

Publication series

Series	Glycobiology
Number	1
Volume	28
ISSN	0959-6658

Keywords

biocuration
bioinformatics
carbohydrate-active enzymes
glycobiology
glycoscience

Access to Document

10.1093/glycob/cwx089

Cite this

Abbott, W., Alber, O., Bayer, E., Berrin, J.-G., Boraston, A., Brumer, H., Brzezinski, R., Clarke, A., Cobucci-Ponzano, B., Cockburn, D., Coutinho, P., Czjzek, M., Dassa, B., Davies, G. J., Eijsink, V., Eklof, J., Felice, A., Ficko-Blean, E., Pincher, G., ... Zhang, R. (2018). Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes. OXFORD UNIV PRESS INC. Glycobiology Vol. 28 No. 1 https://doi.org/10.1093/glycob/cwx089

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title = "Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes",

abstract = "CAZypedia was initiated in 2007 to create a comprehensive, living encyclopedia of the carbohydrate active enzymes (CAZymes) and associated carbohydrate-binding modules involved in the synthesis, modification and degradation of complex carbohydrates. CAZypedia is closely connected with the actively curated CAZy database, which provides a sequence-based foundation for the biochemical, mechanistic and structural characterization of these diverse proteins. Now celebrating its 10th anniversary online, CAZypedia is a successful example of dynamic, community-driven and expert-based biocuration. CAZypedia is an open-access resource available at URL http://www.cazypedia.org.",

keywords = "biocuration, bioinformatics, carbohydrate-active enzymes, glycobiology, glycoscience, biocuration, bioinformatics, carbohydrate-active enzymes, glycobiology, glycoscience",

author = "Wade Abbott and Orly Alber and Ed Bayer and Jean-Guy Berrin and Alisdair Boraston and Harry Brumer and Ryszard Brzezinski and Anthony Clarke and Beatrice Cobucci-Ponzano and Darrell Cockburn and Pedro Coutinho and Mirjam Czjzek and Bareket Dassa and Davies, \{Gideon John\} and Vincent Eijsink and Jens Eklof and Alfons Felice and Elizabeth Ficko-Blean and Geoff Pincher and Thierry Fontaine and Zui Fujimoto and Kiyotaka Fujita and Shinya Fushinobu and Harry Gilbert and Tracey Gloster and Ethan Goddard-Borger and Ian Greig and Jan-Hendrik Hehemann and Glyn Hemsworth and Bernard Henrissat and Masafumi Hidaka and Ramon Hurtado-Guerrero and Kiyohiko Igarashi and Takuya Ishida and Stefan Janecek and Seino Jongkees and Nathalie Juge and Satoshi Kaneko and Takane Katayama and Motomitsu Kitaoka and Naotake Konno and Daniel Kracher and Anna Kulminskaya and \{van Bueren\}, \{Alicia Lammerts\} and Sine Larsen and Junho Lee and Markus Linder and Leila LoLeggio and Roland Ludwig and Ana Luis and Mirko Maksimainen and Brian Mark and Richard McLean and Gurvan Michel and Gurvan Michel and Cedric Montanier and Marco Moracci and Haruhide Mori and Hiroyuki Nakai and Wim Nerinckx and Takayuki Ohnuma and Richard Pickersgill and Kathleen Piens and Tirso Pons and Etienne Rebuffet and Peter Reilly and Magali Remaud-Simeon and Brian Rempel and Kyle Robinson and David Rose and Juha Rouvinen and Wataru Saburi and Yuichi Sakamoto and Mats Sandgren and Fathima Shaikh and Yuval Shoham and \{St John\}, Franz and Jerry Stahlberg and Michael Suits and Gerlind Sulzenbacher and Tomomi Sumida and Ryuichiro Suzuki and Birte Svensson and Toki Taira and Ed Taylor and Takashi Tonozuka and Breeanna Urbanowicz and Gustav Vaaje-Kolstad and \{Van den Ende\}, Wim and Annabelle Varrot and Maxime Versluys and Florence Vincent and David Vocadlo and Warren Wakarchuk and Tom Wennekes and Rohan Williams and Spencer Williams and David Wilson and Stephen Withers and Katsuro Yaoi and Vivian Yip and Ran Zhang",

year = "2018",

doi = "10.1093/glycob/cwx089",

language = "English",

volume = "28",

series = "Glycobiology",

publisher = "OXFORD UNIV PRESS INC",

number = "1",

type = "Other",

}

Abbott, W, Alber, O, Bayer, E, Berrin, J-G, Boraston, A, Brumer, H, Brzezinski, R, Clarke, A, Cobucci-Ponzano, B, Cockburn, D, Coutinho, P, Czjzek, M, Dassa, B, Davies, GJ, Eijsink, V, Eklof, J, Felice, A, Ficko-Blean, E, Pincher, G, Fontaine, T, Fujimoto, Z, Fujita, K, Fushinobu, S, Gilbert, H, Gloster, T, Goddard-Borger, E, Greig, I, Hehemann, J-H, Hemsworth, G, Henrissat, B, Hidaka, M, Hurtado-Guerrero, R, Igarashi, K, Ishida, T, Janecek, S, Jongkees, S, Juge, N, Kaneko, S, Katayama, T, Kitaoka, M, Konno, N, Kracher, D, Kulminskaya, A, van Bueren, AL, Larsen, S, Lee, J, Linder, M, LoLeggio, L, Ludwig, R, Luis, A, Maksimainen, M, Mark, B, McLean, R, Michel, G, Michel, G, Montanier, C, Moracci, M, Mori, H, Nakai, H, Nerinckx, W, Ohnuma, T, Pickersgill, R, Piens, K, Pons, T, Rebuffet, E, Reilly, P, Remaud-Simeon, M, Rempel, B, Robinson, K, Rose, D, Rouvinen, J, Saburi, W, Sakamoto, Y, Sandgren, M, Shaikh, F, Shoham, Y, St John, F, Stahlberg, J, Suits, M, Sulzenbacher, G, Sumida, T, Suzuki, R, Svensson, B, Taira, T, Taylor, E, Tonozuka, T, Urbanowicz, B, Vaaje-Kolstad, G, Van den Ende, W, Varrot, A, Versluys, M, Vincent, F, Vocadlo, D, Wakarchuk, W, Wennekes, T, Williams, R, Williams, S, Wilson, D, Withers, S, Yaoi, K, Yip, V & Zhang, R 2018, Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes. OXFORD UNIV PRESS INC. https://doi.org/10.1093/glycob/cwx089

TY - GEN

T1 - Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

AU - Abbott, Wade

AU - Alber, Orly

AU - Bayer, Ed

AU - Berrin, Jean-Guy

AU - Boraston, Alisdair

AU - Brumer, Harry

AU - Brzezinski, Ryszard

AU - Clarke, Anthony

AU - Cobucci-Ponzano, Beatrice

AU - Cockburn, Darrell

AU - Coutinho, Pedro

AU - Czjzek, Mirjam

AU - Dassa, Bareket

AU - Davies, Gideon John

AU - Eijsink, Vincent

AU - Eklof, Jens

AU - Felice, Alfons

AU - Ficko-Blean, Elizabeth

AU - Pincher, Geoff

AU - Fontaine, Thierry

AU - Fujimoto, Zui

AU - Fujita, Kiyotaka

AU - Fushinobu, Shinya

AU - Gilbert, Harry

AU - Gloster, Tracey

AU - Goddard-Borger, Ethan

AU - Greig, Ian

AU - Hehemann, Jan-Hendrik

AU - Hemsworth, Glyn

AU - Henrissat, Bernard

AU - Hidaka, Masafumi

AU - Hurtado-Guerrero, Ramon

AU - Igarashi, Kiyohiko

AU - Ishida, Takuya

AU - Janecek, Stefan

AU - Jongkees, Seino

AU - Juge, Nathalie

AU - Kaneko, Satoshi

AU - Katayama, Takane

AU - Kitaoka, Motomitsu

AU - Konno, Naotake

AU - Kracher, Daniel

AU - Kulminskaya, Anna

AU - van Bueren, Alicia Lammerts

AU - Larsen, Sine

AU - Lee, Junho

AU - Linder, Markus

AU - LoLeggio, Leila

AU - Ludwig, Roland

AU - Luis, Ana

AU - Maksimainen, Mirko

AU - Mark, Brian

AU - McLean, Richard

AU - Michel, Gurvan

AU - Montanier, Cedric

AU - Moracci, Marco

AU - Mori, Haruhide

AU - Nakai, Hiroyuki

AU - Nerinckx, Wim

AU - Ohnuma, Takayuki

AU - Pickersgill, Richard

AU - Piens, Kathleen

AU - Pons, Tirso

AU - Rebuffet, Etienne

AU - Reilly, Peter

AU - Remaud-Simeon, Magali

AU - Rempel, Brian

AU - Robinson, Kyle

AU - Rose, David

AU - Rouvinen, Juha

AU - Saburi, Wataru

AU - Sakamoto, Yuichi

AU - Sandgren, Mats

AU - Shaikh, Fathima

AU - Shoham, Yuval

AU - St John, Franz

AU - Stahlberg, Jerry

AU - Suits, Michael

AU - Sulzenbacher, Gerlind

AU - Sumida, Tomomi

AU - Suzuki, Ryuichiro

AU - Svensson, Birte

AU - Taira, Toki

AU - Taylor, Ed

AU - Tonozuka, Takashi

AU - Urbanowicz, Breeanna

AU - Vaaje-Kolstad, Gustav

AU - Van den Ende, Wim

AU - Varrot, Annabelle

AU - Versluys, Maxime

AU - Vincent, Florence

AU - Vocadlo, David

AU - Wakarchuk, Warren

AU - Wennekes, Tom

AU - Williams, Rohan

AU - Williams, Spencer

AU - Wilson, David

AU - Withers, Stephen

AU - Yaoi, Katsuro

AU - Yip, Vivian

AU - Zhang, Ran

PY - 2018

Y1 - 2018

N2 - CAZypedia was initiated in 2007 to create a comprehensive, living encyclopedia of the carbohydrate active enzymes (CAZymes) and associated carbohydrate-binding modules involved in the synthesis, modification and degradation of complex carbohydrates. CAZypedia is closely connected with the actively curated CAZy database, which provides a sequence-based foundation for the biochemical, mechanistic and structural characterization of these diverse proteins. Now celebrating its 10th anniversary online, CAZypedia is a successful example of dynamic, community-driven and expert-based biocuration. CAZypedia is an open-access resource available at URL http://www.cazypedia.org.

AB - CAZypedia was initiated in 2007 to create a comprehensive, living encyclopedia of the carbohydrate active enzymes (CAZymes) and associated carbohydrate-binding modules involved in the synthesis, modification and degradation of complex carbohydrates. CAZypedia is closely connected with the actively curated CAZy database, which provides a sequence-based foundation for the biochemical, mechanistic and structural characterization of these diverse proteins. Now celebrating its 10th anniversary online, CAZypedia is a successful example of dynamic, community-driven and expert-based biocuration. CAZypedia is an open-access resource available at URL http://www.cazypedia.org.

KW - biocuration

KW - bioinformatics

KW - carbohydrate-active enzymes

KW - glycobiology

KW - glycoscience

KW - biocuration

KW - bioinformatics

KW - carbohydrate-active enzymes

KW - glycobiology

KW - glycoscience

UR - https://res.slu.se/id/publ/94667

U2 - 10.1093/glycob/cwx089

DO - 10.1093/glycob/cwx089

M3 - Other publication

C2 - 29040563

VL - 28

T3 - Glycobiology

PB - OXFORD UNIV PRESS INC

ER -

Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

Abstract

Publication series

Keywords

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