Genomic sequence of Wild potato mosaic virus as compared to the genomes of other potyviruses

Carl Spetz; Jari Valkonen

doi:10.1007/s00705-002-0929-9

Genomic sequence of Wild potato mosaic virus as compared to the genomes of other potyviruses

Carl Spetz
, Jari Valkonen

Department of Plant Biology

Publication: Contribution to journal › Journal article › peer-review

Abstract

The complete nucleotide sequence of Wild potato mosaic virus (WPMV) was determined, showing that it is a distinct member of the genus Potyvirus (family Poryviridae). The genome consists of 9853 nucleotides and encodes a single polyprotein of 3065 amino acids. The 5'- and 3'-non translated regions (NTR) were 182 and 472 nucleotides, respectively. Alignment of the predicted WPMV polyprotein sequence with other members of the genus Potyvirus revealed nine putative cleavage sites resulting in ten mature proteins. Amino acid and nucleotide sequence identities and the exceptionally long 3'-NTR indicated a close relationship between WPMV and Potato virus V (PVV). Phylogenetic analysis based on the polyprotein and coat protein amino acid sequences grouped WPMV, PVV, Pepper mottle virus and Potato virus Y in one cluster distinct from other potyviruses.

Original language	English
Pages (from-to)	373-380
Number of pages	8
Journal	Archives of Virology
Volume	148
Issue number	2
DOIs	https://doi.org/10.1007/s00705-002-0929-9
Publication status	Published - 2003

Access to Document

10.1007/s00705-002-0929-9

Cite this

@article{cff4e51fe97a4a1694d9c7a1d5f822fd,

title = "Genomic sequence of Wild potato mosaic virus as compared to the genomes of other potyviruses",

abstract = "The complete nucleotide sequence of Wild potato mosaic virus (WPMV) was determined, showing that it is a distinct member of the genus Potyvirus (family Poryviridae). The genome consists of 9853 nucleotides and encodes a single polyprotein of 3065 amino acids. The 5'- and 3'-non translated regions (NTR) were 182 and 472 nucleotides, respectively. Alignment of the predicted WPMV polyprotein sequence with other members of the genus Potyvirus revealed nine putative cleavage sites resulting in ten mature proteins. Amino acid and nucleotide sequence identities and the exceptionally long 3'-NTR indicated a close relationship between WPMV and Potato virus V (PVV). Phylogenetic analysis based on the polyprotein and coat protein amino acid sequences grouped WPMV, PVV, Pepper mottle virus and Potato virus Y in one cluster distinct from other potyviruses.",

author = "Carl Spetz and Jari Valkonen",

year = "2003",

doi = "10.1007/s00705-002-0929-9",

language = "English",

volume = "148",

pages = "373--380",

journal = "Archives of Virology",

issn = "0304-8608",

publisher = "Springer-Verlag Wien",

number = "2",

}

TY - JOUR

T1 - Genomic sequence of Wild potato mosaic virus as compared to the genomes of other potyviruses

AU - Spetz, Carl

AU - Valkonen, Jari

PY - 2003

Y1 - 2003

N2 - The complete nucleotide sequence of Wild potato mosaic virus (WPMV) was determined, showing that it is a distinct member of the genus Potyvirus (family Poryviridae). The genome consists of 9853 nucleotides and encodes a single polyprotein of 3065 amino acids. The 5'- and 3'-non translated regions (NTR) were 182 and 472 nucleotides, respectively. Alignment of the predicted WPMV polyprotein sequence with other members of the genus Potyvirus revealed nine putative cleavage sites resulting in ten mature proteins. Amino acid and nucleotide sequence identities and the exceptionally long 3'-NTR indicated a close relationship between WPMV and Potato virus V (PVV). Phylogenetic analysis based on the polyprotein and coat protein amino acid sequences grouped WPMV, PVV, Pepper mottle virus and Potato virus Y in one cluster distinct from other potyviruses.

AB - The complete nucleotide sequence of Wild potato mosaic virus (WPMV) was determined, showing that it is a distinct member of the genus Potyvirus (family Poryviridae). The genome consists of 9853 nucleotides and encodes a single polyprotein of 3065 amino acids. The 5'- and 3'-non translated regions (NTR) were 182 and 472 nucleotides, respectively. Alignment of the predicted WPMV polyprotein sequence with other members of the genus Potyvirus revealed nine putative cleavage sites resulting in ten mature proteins. Amino acid and nucleotide sequence identities and the exceptionally long 3'-NTR indicated a close relationship between WPMV and Potato virus V (PVV). Phylogenetic analysis based on the polyprotein and coat protein amino acid sequences grouped WPMV, PVV, Pepper mottle virus and Potato virus Y in one cluster distinct from other potyviruses.

UR - https://res.slu.se/id/publ/1898

U2 - 10.1007/s00705-002-0929-9

DO - 10.1007/s00705-002-0929-9

M3 - Journal article

C2 - 12556999

SN - 0304-8608

VL - 148

SP - 373

EP - 380

JO - Archives of Virology

JF - Archives of Virology

IS - 2

ER -

Genomic sequence of Wild potato mosaic virus as compared to the genomes of other potyviruses

Abstract

Access to Document

Other files and links

Cite this