Complete genome sequence of Serratia plymuthica strain AS12

Roger Finlay; Saraswoti Neupane; Sadhna Alström; Lynne Goodwin; Nikos C. Kyrpides; Susan Lucas; Alla Lapidus; David Bruce; Sam Pitluck; Lin Peters; Galina Ovchinnikova; Olga Chertkov; James Han; Cliff Han; Roxanne Tapia; John C. Detter; Miriam Land; Loren Hauser; Jan-Fang Cheng; Natalia Ivanova; Ioanna Pagani; Hans-Peter Klenk; Tanja Woyke; Nils Högberg

doi:10.4056/sigs.2705996

Complete genome sequence of Serratia plymuthica strain AS12

Roger Finlay
, Saraswoti Neupane
, Sadhna Alström
, Lynne Goodwin
, Nikos C. Kyrpides
, Susan Lucas
, Alla Lapidus
, David Bruce
, Sam Pitluck
, Lin Peters
, Galina Ovchinnikova
, Olga Chertkov
, James Han
, Cliff Han
, Roxanne Tapia
, John C. Detter
, Miriam Land
, Loren Hauser
, Jan-Fang Cheng
, Natalia Ivanova

Ioanna Pagani, Hans-Peter Klenk, Tanja Woyke, Nils Högberg

Department of Forest Mycology and Plant Pathology

Publication: Contribution to journal › Journal article › peer-review

Abstract

A plant-associated member of the family Enterobacteriaceae, Serratia plymuthica strain AS12 was isolated from rapeseed roots. It is of scientific interest because it promotes plant growth and inhibits plant pathogens. The genome of S. plymuthica AS12 comprises a 5,443,009 bp long circular chromosome, which consists of 4,952 protein-coding genes, 87 tRNA genes and 7 rRNA operons. This genome was sequenced within the 2010 DOE-JGI Community Sequencing Program (CSP2010) as part of the project entitled "Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens".

Original language	English
Pages (from-to)	165-173
Number of pages	9
Journal	Standards in Genomic Sciences
Volume	6
Issue number	2
DOIs	https://doi.org/10.4056/sigs.2705996
Publication status	Published - 2012

Keywords

Facultative anaerobe
gram-negative
motile
non-sporulating
mesophilic
chemoorganotrophic
agriculture
Enterobacteriaceae
CSP 2010

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10.4056/sigs.2705996

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Finlay, R., Neupane, S., Alström, S., Goodwin, L., Kyrpides, N. C., Lucas, S., Lapidus, A., Bruce, D., Pitluck, S., Peters, L., Ovchinnikova, G., Chertkov, O., Han, J., Han, C., Tapia, R., Detter, J. C., Land, M., Hauser, L., Cheng, J.-F., ... Högberg, N. (2012). Complete genome sequence of Serratia plymuthica strain AS12. Standards in Genomic Sciences, 6(2), 165-173. https://doi.org/10.4056/sigs.2705996

@article{4beafe60360c4818a536e9e3f96a411d,

title = "Complete genome sequence of Serratia plymuthica strain AS12",

abstract = "A plant-associated member of the family Enterobacteriaceae, Serratia plymuthica strain AS12 was isolated from rapeseed roots. It is of scientific interest because it promotes plant growth and inhibits plant pathogens. The genome of S. plymuthica AS12 comprises a 5,443,009 bp long circular chromosome, which consists of 4,952 protein-coding genes, 87 tRNA genes and 7 rRNA operons. This genome was sequenced within the 2010 DOE-JGI Community Sequencing Program (CSP2010) as part of the project entitled {"}Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens{"}.",

keywords = "Facultative anaerobe, gram-negative, motile, non-sporulating, mesophilic, chemoorganotrophic, agriculture, Enterobacteriaceae, CSP 2010, Facultative anaerobe, gram-negative, motile, non-sporulating, mesophilic, chemoorganotrophic, agriculture, Enterobacteriaceae, CSP 2010",

author = "Roger Finlay and Saraswoti Neupane and Sadhna Alstr{\"o}m and Lynne Goodwin and Kyrpides, \{Nikos C.\} and Susan Lucas and Alla Lapidus and David Bruce and Sam Pitluck and Lin Peters and Galina Ovchinnikova and Olga Chertkov and James Han and Cliff Han and Roxanne Tapia and Detter, \{John C.\} and Miriam Land and Loren Hauser and Jan-Fang Cheng and Natalia Ivanova and Ioanna Pagani and Hans-Peter Klenk and Tanja Woyke and Nils H{\"o}gberg",

year = "2012",

doi = "10.4056/sigs.2705996",

language = "English",

volume = "6",

pages = "165--173",

journal = "Standards in Genomic Sciences",

issn = "1944-3277",

publisher = "Genomic Standards Consortium",

number = "2",

}

Finlay, R, Neupane, S, Alström, S, Goodwin, L, Kyrpides, NC, Lucas, S, Lapidus, A, Bruce, D, Pitluck, S, Peters, L, Ovchinnikova, G, Chertkov, O, Han, J, Han, C, Tapia, R, Detter, JC, Land, M, Hauser, L, Cheng, J-F, Ivanova, N, Pagani, I, Klenk, H-P, Woyke, T & Högberg, N 2012, 'Complete genome sequence of Serratia plymuthica strain AS12', Standards in Genomic Sciences, vol. 6, no. 2, pp. 165-173. https://doi.org/10.4056/sigs.2705996

TY - JOUR

T1 - Complete genome sequence of Serratia plymuthica strain AS12

AU - Finlay, Roger

AU - Neupane, Saraswoti

AU - Alström, Sadhna

AU - Goodwin, Lynne

AU - Kyrpides, Nikos C.

AU - Lucas, Susan

AU - Lapidus, Alla

AU - Bruce, David

AU - Pitluck, Sam

AU - Peters, Lin

AU - Ovchinnikova, Galina

AU - Chertkov, Olga

AU - Han, James

AU - Han, Cliff

AU - Tapia, Roxanne

AU - Detter, John C.

AU - Land, Miriam

AU - Hauser, Loren

AU - Cheng, Jan-Fang

AU - Ivanova, Natalia

AU - Pagani, Ioanna

AU - Klenk, Hans-Peter

AU - Woyke, Tanja

AU - Högberg, Nils

PY - 2012

Y1 - 2012

N2 - A plant-associated member of the family Enterobacteriaceae, Serratia plymuthica strain AS12 was isolated from rapeseed roots. It is of scientific interest because it promotes plant growth and inhibits plant pathogens. The genome of S. plymuthica AS12 comprises a 5,443,009 bp long circular chromosome, which consists of 4,952 protein-coding genes, 87 tRNA genes and 7 rRNA operons. This genome was sequenced within the 2010 DOE-JGI Community Sequencing Program (CSP2010) as part of the project entitled "Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens".

AB - A plant-associated member of the family Enterobacteriaceae, Serratia plymuthica strain AS12 was isolated from rapeseed roots. It is of scientific interest because it promotes plant growth and inhibits plant pathogens. The genome of S. plymuthica AS12 comprises a 5,443,009 bp long circular chromosome, which consists of 4,952 protein-coding genes, 87 tRNA genes and 7 rRNA operons. This genome was sequenced within the 2010 DOE-JGI Community Sequencing Program (CSP2010) as part of the project entitled "Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens".

KW - Facultative anaerobe

KW - gram-negative

KW - motile

KW - non-sporulating

KW - mesophilic

KW - chemoorganotrophic

KW - agriculture

KW - Enterobacteriaceae

KW - CSP 2010

KW - Facultative anaerobe

KW - gram-negative

KW - motile

KW - non-sporulating

KW - mesophilic

KW - chemoorganotrophic

KW - agriculture

KW - Enterobacteriaceae

KW - CSP 2010

UR - https://res.slu.se/id/publ/39002

U2 - 10.4056/sigs.2705996

DO - 10.4056/sigs.2705996

M3 - Journal article

C2 - 22768360

SN - 1944-3277

VL - 6

SP - 165

EP - 173

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

IS - 2

ER -

Complete genome sequence of Serratia plymuthica strain AS12

Abstract

Keywords

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